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Past publications

Last modified September 23, 2016

The UniProt Consortium
Activities at the Universal Protein Resource (UniProt)
Nucleic Acids Res. 42: D191-D198 (2014).

The UniProt Consortium
Update on activities at the Universal Protein Resource (UniProt) in 2013
Nucleic Acids Res. 41: D43-D47 (2013).

The UniProt Consortium
Reorganizing the protein space at the Universal Protein Resource (UniProt)
Nucleic Acids Res. 40: D71-D75 (2012).

The UniProt Consortium
The Universal Protein Resource (UniProt) in 2010
Nucleic Acids Res. 38:D142-D148 (2010).

Jungo F., Estreicher A., Bairoch A., Bougueleret L., Xenarios I.
Animal Toxins: How is complexity represented in databases?
Toxins 2:262-282(2010)

The UniProt Consortium
The Universal Protein Resource (UniProt)
Nucleic Acids Res. 37:D169-D174.

Schneider M., Lane L., Boutet E., Lieberherr D., Tognolli M., Bougueleret L., Bairoch A.
The UniProtKB/Swiss-Prot knowledgebase and its Plant Proteome Annotation Program
J. Proteomics 72:567-573(2009).

The UniProt Consortium
The Universal Protein Resource (UniProt)
Nucleic Acids Res. 36:D190-D195.

The UniProt Consortium
The Universal Protein Resource (UniProt)
Nucleic Acids Res. 35:D193-D197.

Wu C.H., Apweiler R., Bairoch A., Natale D.A., Barker W.C., Boeckmann B., Ferro S., Gasteiger E., Huang H., Lopez R., Magrane M., Martin M.J., Mazumder R., O’Donovan C., Redaschi N., Suzek B.
The Universal Protein Resource (UniProt): an expanding universe of protein information
Nucleic Acids Res. 34:D187-D191.

Bairoch A., Apweiler R., Wu C.H., Barker W.C., Boeckmann B., Ferro S.,Gasteiger E., Huang H., Lopez R., Magrane M., Martin M.J.,Natale D.A., O’Donovan C., Redaschi N., Yeh L.S.
The Universal Protein Resource (UniProt)
Nucleic Acids Res. 33:D154-D159.

Apweiler R., Bairoch A., Wu C.H., Barker W.C., Boeckmann B., Ferro S., Gasteiger E., Huang H., Lopez R., Magrane M., Martin M.J., Natale D.A., O’Donovan C., Redaschi N., Yeh L.S.
UniProt: the Universal Protein knowledgebase
Nucleic Acids Res. 32:D115-D119.

Schneider M., Bairoch A., Wu C.H., Apweiler R.
Plant Protein Annotation in the UniProt Knowledgebase
Plant Physiol. 138:59-66(2005).

Lima T., Auchincloss A.H., Coudert E., Keller G., Michoud K., Rivoire C., Bulliard V., de Castro E., Lachaize C., Baratin D., Phan I., Bougueleret L., Bairoch A.
HAMAP: a database of completely sequenced microbial proteome sets and manually curated microbial protein families in UniProtKB/Swiss-Prot
Nucleic Acids Res. 37:D471-D478 (2009)

Jungo F., Bairoch A.
Tox-Prot, the toxin protein annotation program of the Swiss-Prot protein knowledgebase
Toxicon 45:293-301(2005).

Boeckmann B., Bairoch A., Apweiler R., Blatter M.-C., Estreicher A., Gasteiger E., Martin M.J., Michoud K., O’Donovan C., Phan I., Pilbout S., Schneider M.
The Swiss-Prot protein knowledgebase and its supplement TrEMBL in 2003
Nucleic Acids Res. 31:365-370(2003).

O’Donovan C., Martin M.J., Gattiker A., Gasteiger E., Bairoch A., Apweiler R.
High-quality protein knowledge resource: Swiss-Prot and TrEMBL
Brief. Bioinform. 3:275-284(2002).

Apweiler R.
Functional information in Swiss-Prot: the basis for large-scale characterisation of protein sequences
Brief. Bioinform. 2:9-18(2001).

Gasteiger E., Jung E., Bairoch A.
Swiss-Prot: connecting biomolecular knowledge via a protein database
Curr. Issues Mol. Biol. 3:47-55(2001).

Jung E., Veuthey A.-L., Gasteiger E., Bairoch A.
Annotation of glycoproteins in the Swiss-Prot database
Proteomics 1:262-268(2001).

O’Donovan C., Apweiler R., Bairoch A.
The human proteomics initiative (HPI)
Trends Biotechnol. 19:178-181(2001).

Kersey P., Hermjakob H., Apweiler R.
VARSPLIC: alternatively-spliced protein sequences derived from Swiss-Prot and TrEMBL
Bioinformatics 16:1048-1049(2000).

Fleischmann W., Moeller S., Gateau A., Apweiler R.
A novel method for automatic functional annotation of proteins
Bioinformatics 15:228-233(1999).

Junker V.L., Apweiler R., Bairoch A.
Representation of functional information in the Swiss-Prot data bank
Bioinformatics 15:1066-1067(1999).

Moeller S., Leser U., Fleischmann W., Apweiler R.
EDITtoTrEMBL: a distributed approach to high-quality automated protein sequence annotation
Bioinformatics 15:219-227(1999).

O’Donovan C., Martin M.J., Glemet E., Codani J.J., Apweiler R.
Removing redundancy in Swiss-Prot and TrEMBL
Bioinformatics 15:258-259(1999).

Bairoch A., Apweiler R.
The Swiss-Prot protein sequence database: its relevance to human molecular medical research
J. Mol. Med. 75:312-316(1997).